Publications: Biomedical
2006
Refereed Journal Papers
L. Zhang, B.S. Gardiner, D.W. Smith, P. Pivonka, A.J. Grodzinsky, The effect of cyclic deformation and solute binding on solute transport in cartilage, Archives of Biochemistry and Biophysics (Accepted), 2006.
Gardiner BS, Tordesillas A, Effects of particle size distribution in a three-dimensional micropolar continuum model of granular media, Powder Technology, 161, 110-121, 2006.
Presentations
L. Zhang, B.S. Gardiner, D.W. Smith, P. Pivonka, Solute Transport in Cartilage: Effects of Cyclic Deformation and ECM Binding, 15th International Conference on Mechanics in Medicine and Biology, Singapore, 2006.
L. Zhang, B.S. Gardiner, D.W. Smith, P. Pivonka, The role of solute binding on solute transport in cyclic deformed cartilage, 12th Annual Scientific Meeting of Australian & New Zealand Orthopaedic Research Society, Oct., 2006. Canberra, Australia.
Gardiner, B.S., Metabolic modelling, 8th Melbourne Bioinformatics Course, 4th-8th September 2006. Invited by Dr Tom Garrett.
Smith, D.W., Systems Biologywhat can it offer? 8th Melbourne Bioinformatics Course, 4th-8th September 2006. Invited by Dr Tom Garrett.
Gardiner, B.S., Mathematical modelling of intercellular signalling in development and disease. The Peter MacCallum Cancer Institute, 29th June 2006. Invited by Dr Tony Brumby.
Pivonka P, Smith D, Dunstan C, Gardiner B, Mathematical Modeling of bone cell interactions: application to bone remodeling, 4th Clare Valley Bone Meeting, South Australia, Australia.
Pivonka P, Smith D, Gardiner B, Dunstan C, Numerical investigation of bone cell remodeling by means of a cell population dynamics model, EPSM 2006, Engineering and Physical Sciences in Medicine 2006, Noosa Lakes, Sunshine Coast, Queensland.
Pivonka P, Smith D, Gardiner B, Dunstan C, Sims N, Martin TJ, Mathematical model describing bone cell interactions: application to bone remodeling, ComBio 2006, Brisbane, Queensland.
Pivonka P, Smith D, Gardiner B, Dunstan C, Sims N, Martin TJ, Role of mathematical modeling in bone biology: from intracellular signaling to tissue level, 16th Annual Meeting of the Australian and New Zealand Bone and Mineral Society, Port Douglas, Queensland, Australia.
2005
Refereed Journal Papers
Imtiaz, M., Katnik, C. Smith, D.W., Van-Helden, D.F. (2005) Role of voltage dependent store Calcium release in the synchronization of calcium oscillations. Accepted. Biophysical Journal
Gardiner BS, Tordesillas A, The link between discrete and continuous modeling of liquid foam at the level of a single bubble, Journal of Rheology, 49(4): 819-838, 2005.
Boudreau BP, Algar C, Johnson BD, Croudace I, Reed A, Furukawa Y, Dorgan KM, Jumars PA, Grader AS, Gardiner BS, Bubble growth and rise in soft sediments, Geology, 33(6): 517-520, 2005.
Gardiner BS, Tordesillas A, Micromechanical constitutive modelling of granular media: evolution and loss of contacts in particle clusters, Journal of Engineering Mathematics, 52(1-3): 93-106, 2005.
Conference Papers
Pivonka P, Smith D, Gardiner B, Dunstan C, Hierarchical model describing bone cell dynamics: application to bone remodeling, ICMMB-15, 15th International Conference on Mechanics in Medicine and Biology, Singapore.
Pivonka, P, D. Smith, and B. Gardiner. Fundamental theoretical study of nanoscale ion transport through charged porous materials: Part I - diffusion, In Y. Abousleiman, A. Cheng, F.-J. Ulm, editors, Poromechanics III (Biot Centennial 1905-2005), A.A. Balkema Publishers, London, UK, pp 417-422, 2005.
Pivonka, P, D. Smith, and B. Gardiner. Fundamental theoretical study of nanoscale ion transport through charged porous materials: Part II - diffusion-advection, In Y. Abousleiman, A. Cheng, F.-J. Ulm, editors, Poromechanics III (Biot Centennial 1905-2005), A.A. Balkema Publishers, London, UK, pp 449-453, 2005.
Gardiner BS, Smith DW, Pivonka P (2005) A two-dimensional mathematical model for dorsal appendage cell patterning in Drosophila. Developmental Biology, 283 (2): 688-688 553 JUL 15 2005.
Pivonka, P., Smith, D.W. and Gardiner, B. (2005) Investigation of fluid pressure relaxation at the canaliculi scale arising from physiologic loading conditions, McMat (mechanics and materials conference), Baton Rouge, Louisiana.
Presentations
Gardiner, B.S., Network modeling and b-catenin, The Wnt signaling workshop, Ludwig Cancer Institute (Melbourne, Australia, 16th of December 2005), invited by Professor Tony Burgess.
Smith, D.W., Computational Biologywhat can it offer? Walter and Eliza Hall Institute, (Melbourne, Australia, 11th of October 2005), invited by Professor Peter Colman.
Gardiner, B.S., Can cyclic loading enhance the transport of nutrients into cartilage? Department of Bioengineering, Massachusetts Institute of Technology (Cambridge, USA, 5th of August 2005), invited by Professor Alan Grodzinsky.
2004
Refereed Journal Papers
Adeeb, S, Ali, A, Shrive, N, Frank, C & Smith, DW (2004), Modeling the behaviour of ligaments: A technical note. Computer Methods in Biomechanics and Biomedical Engineering, 7(1), 33-42.
Adeeb, S. Ali, A., Shrive, N., Frank, C. and Smith, D.W. (2004) Modeling the behaviour of ligaments: A technical note. Computer Methods in Biomechanics and Biomedical Engineering 7(1), 33-42.
Refereed Conference Papers
Imtiaz, M., Smith, D.W. and Van Helden, D. (2004) Voltage coupled calcium stores with voltage dependent inositol 1,4,5-triphosphate synthesis interact as a system of weakly coupled oscillators, Biomed 2004, Kuala Lumpur, Malaysia.
Conference Papers
Gardiner, B.S., Smith, D.W., Pivonka, P. and Grodzinsky, A.J. (2004) Active transport of IGF-1 through Articular Cartilage, The Annual Conference of Engineering and Physical Sciences in Medicine, (EPSM04, Geelong)
Gardiner, B.S., Smith, D.W., Pivonka, P. and Grodzinsky, A.J (2004) Transport of large molecules through articular cartilage subject to dynamic loading, 10 th Annual Scientific Meeting of the Australian and New Zealand Orthopaedic Research Society, Sydney Australia, 22-24 October.
Refereed Conference Papers
Imtiaz, M. Smith D.W. and Van Helden, D.. (2003) Voltage dependence of slow waves in smooth muscle , World Congress on Medical Physics and Biomedical Engineering, Sydney , Aug 2003.
Refereed Journal Papers
McGrath, S, Mclean, M, Smith, D, Bisits, A, Giles, W & Smith R (2002), Maternal plasma corticotropin-releasing hormone trajectories vary depending on the cause of preterm delivery, American Journal of Obstetrics and Gynecology, 186(2), 257-60.
Imtiaz, M, Smith, DW & VanHelden, DF (2002), A theoretical model of slow wave regulation using voltage�dependent synthesis of inositol 1,4,5�triphosphate. Biophysical Journal, Vol 83, 1877-1890.
McGrath S, McLean M, Smith D, Bisits A, Giles W, Smith R. (2002) Maternal plasma corticotropin-releasing hormone trajectories vary depending on the cause of preterm delivery. American Journal of Obstetrics and Gynecology. 2002 186(2):257-60.
Imtiaz, M., Smith, D.W., Van-Helden, D.F. (2002) A theoretical model of slow wave regulation using voltagedependent synthesis of inositol 1,4,5triphosphate. Biophysical Journal, Vol 83 p. 1877-1890.
Refereed Conference Papers
McGrath, S. McLean, M. Smith D.W. and Smith R. (2000) Individual Corticotropinreleasing hormone (CRH) trajectories during pregnancy depend on the presence of type of preterm delivery, International Society of Endocrinology Conference, Sydney, Oct 2000.